Select

structure.select.cli_select_atoms()

Command-line interface for selecting atoms in PDB file.

structure.select.run_select_atoms(pdb_path, select_string, output_path=None)

Select atoms from PDB file.

PARAMETER	DESCRIPTION
pdb_path	Path to PDB file. TYPE: str
select_string	[MDAnalysis selection string] (https://docs.mdanalysis.org/stable/documentation_pages/selections.html) TYPE: str
output_path	Path to save new PDB file. If None, then no file is written. TYPE: str | None DEFAULT: None

RETURNS	DESCRIPTION
AtomGroup	Atomic positions after atom selection.